2021 Biophysics Student Publications

2021 Publications:

Yerrabothala S, Gourley BL, Ford JC, Ahmed SR, Guerin SJ, Porter M, Wishart HA, Ernstoff MS, Fadul CE, Ornstein DL. Systemic coagulation is activated in patients with meningioma and glioblastoma. J Neurooncol. 2021 Nov;155(2):173-180.

Bakshi S, Leoncini E, Baker C, Cañas-Duarte SJ, Okumus B, Paulsson J. 2021. Tracking bacterial lineages in complex and dynamic environments with applications for growth control and persistence. Nat Microbiol. 6(6):783-791.

Barabási DL, Czégel D. 2021. Constructing graphs from genetic encodings. Sci Rep. 2021 11(1):13270.

Shrestha P, Yang D, Tomov TE, MacDonald JI, Ward A, Bergal HT, Krieg E, Cabi S, Luo Y, Nathwani B, Johnson-Buck A, Shih WM, Wong WP.  2021.  Single-molecule mechanical fingerprinting with DNA nanoswitch calipers. Nat Nanotechnol. 16(12):1362-1370.

Brandão HB, Ren Z, Karaboja X, Mirny LA, Wang X. DNA-loop-extruding SMC complexes can traverse one another in vivo. Nat Struct Mol Biol. 2021 Aug;28(8):642-651.

Brandão HB, Gabriele M, Hansen AS. Tracking and interpreting long-range chromatin interactions with super-resolution live-cell imaging. Curr Opin Cell Biol. 2021 Jun;70:18-26.

Karaboja X, Ren Z, Brandão HB, Paul P, Rudner DZ, Wang X. XerD unloads bacterial SMC complexes at the replication terminus. Mol Cell. 2021 Feb 18;81(4):756-766.e8.

Caradonna TM, Schmidt AG. 2021. Protein engineering strategies for rational immunogen design. NPJ Vaccines. 6(1):154.

Filsinger GT, Wannier TM, Pedersen FB, Lutz ID, Zhang J, Stork DA, Debnath A, Gozzi K, Kuchwara H, Volf V, Wang S, Rios X, Gregg CJ, Lajoie MJ, Shipman SL, Aach J, Laub MT, Church GM. 2021. Characterizing the portability of phage-encoded homologous recombination proteins. Nat Chem Biol. 17(4):394-402.

Kuzma BA, Pence IJ, Greenfield DA, Ho A, Evans CL. 2021. Visualizing and quantifying antimicrobial drug distribution in tissue. Adv Drug Deliv Rev. 177:113942.

Guo Y, Nitzan M, Brenner MP. 2021. Programming cell growth into different cluster shapes using diffusible signals. PLoS Comput Biol. 17(11):e1009576.

Guo Y, Amir A. 2021. Exploring the effect of network topology, mRNA and protein dynamics on gene regulatory network stability. Nat Commun. 12(1):130. Erratum in: Nat Commun. 12(1):994.

Chung J, Maruvka YE, Sudhaman S, Kelly J, Haradhvala NJ, Bianchi V, Edwards M, Forster VJ, Nunes NM, Galati MA, Komosa M, Deshmukh S, Cabric V, Davidson S, Zatzman M, Light N, Hayes R, Brunga L, Anderson ND, Ho B, Hodel KP, Siddaway R, Morrissy AS, Bowers DC, Larouche V, Bronsema A, Osborn M, Cole KA, Opocher E, Mason G, Thomas GA, George B, Ziegler DS, Lindhorst S, Vanan M, Yalon-Oren M, Reddy AT, Massimino M, Tomboc P, Van Damme A, Lossos A, Durno C, Aronson M, Morgenstern DA, Bouffet E, Huang A, Taylor MD, Villani A, Malkin D, Hawkins CE, Pursell ZF, Shlien A, Kunkel TA, Getz G, Tabori U.  2021. DNA Polymerase and Mismatch Repair Exert Distinct Microsatellite Instability Signatures in Normal and Malignant Human Cells. Cancer Discov. 11(5):1176-1191.

Sklavenitis-Pistofidis R*, Haradhvala NJ*, Getz G, Ghobrial IM. 2021. Inflammatory stromal cells in the myeloma microenvironment. Nat Immunol. 22(6):677-678. (*co-1st authors).

Wellner A, McMahon C, Gilman MSA, Clements JR, Clark S, Nguyen KM, Ho MH, Hu VJ, Shin JE, Feldman J, Hauser BM, Caradonna TM, Wingler LM, Schmidt AG, Marks DS, Abraham J, Kruse AC, Liu CC. 2021. Rapid generation of potent antibodies by autonomous hypermutation in yeast. Nat Chem Biol. 17(10):1057-1064.

Amraei R, Yin W, Napoleon MA, Suder EL, Berrigan J, Zhao Q, Olejnik J, Chandler KB, Xia C, Feldman J, Hauser BM, Caradonna TM, Schmidt AG, Gummuluru S, Mühlberger E, Chitalia V, Costello CE, Rahimi N. 2021. CD209L/L-SIGN and CD209/DC-SIGN Act as Receptors for SARS-CoV-2. ACS Cent Sci. 7(7):1156-1165.

Garcia-Beltran WF, Lam EC, Astudillo MG, Yang D, Miller TE, Feldman J, Hauser BM, Caradonna TM, Clayton KL, Nitido AD, Murali MR, Alter G, Charles RC, Dighe A, Branda JA, Lennerz JK, Lingwood D, Schmidt AG, Iafrate AJ, Balazs AB. 2021. COVID-19-neutralizing antibodies predict disease severity and survival. Cell. 184(2):476-488.e11.

Li D, Edwards RJ, Manne K, Martinez DR, Schäfer A, Alam SM, Wiehe K, Lu X, Parks R, Sutherland LL, Oguin TH 3rd, McDanal C, Perez LG, Mansouri K, Gobeil SMC, Janowska K, Stalls V, Kopp M, Cai F, Lee E, Foulger A, Hernandez GE, Sanzone A, Tilahun K, Jiang C, Tse LV, Bock KW, Minai M, Nagata BM, Cronin K, Gee-Lai V, Deyton M, Barr M, Von Holle T, Macintyre AN, Stover E, Feldman J, Hauser BM, Caradonna TM, Scobey TD, Rountree W, Wang Y, Moody MA, Cain DW, DeMarco CT, Denny TN, Woods CW, Petzold EW, Schmidt AG, Teng IT, Zhou T, Kwong PD, Mascola JR, Graham BS, Moore IN, Seder R, Andersen H, Lewis MG, Montefiori DC, Sempowski GD, Baric RS, Acharya P, Haynes BF, Saunders KO. 2021. In vitro and in vivo functions of SARS-CoV-2 infection-enhancing and neutralizing antibodies. Cell. 184(16):4203-4219.e32.

Gillani R, Seong BKA, Crowdis J, Conway JR, Dharia NV, Alimohamed S, Haas BJ, Han K, Park J, Dietlein F, He MX, Imamovic A, Ma C, Bassik MC, Boehm JS, Vazquez F, Gusev A, Liu D, Janeway KA, McFarland JM, Stegmaier K, Van Allen EM. 2021. Gene Fusions Create Partner and Collateral Dependencies Essential to Cancer Cell Survival. Cancer Res.;81(15):3971-3984.

Bakouny Z, Braun DA, Shukla SA, Pan W, Gao X, Hou Y, Flaifel A, Tang S, Bosma-Moody A, He MX, Vokes N, Nyman J, Xie W, Nassar AH, Abou Alaiwi S, Flippot R, Bouchard G, Steinharter JA, Nuzzo PV, Ficial M, Sant'Angelo M, Forman J, Berchuck JE, Dudani S, Bi K, Park J, Camp S, Sticco-Ivins M, Hirsch L, Baca SC, Wind-Rotolo M, Ross-Macdonald P, Sun M, Lee GM, Chang SL, Wei XX, McGregor BA, Harshman LC, Genovese G, Ellis L, Pomerantz M, Hirsch MS, Freedman ML, Atkins MB, Wu CJ, Ho TH, Linehan WM, McDermott DF, Heng DYC, Viswanathan SR, Signoretti S, Van Allen EM, Choueiri TK. 2021. Integrative molecular characterization of sarcomatoid and rhabdoid renal cell carcinoma. Nat Commun. 12(1):808.

Keenan TE, Guerriero JL, Barroso-Sousa R, Li T, O'Meara T, Giobbie-Hurder A, Tayob N, Hu J, Severgnini M, Agudo J, Vaz-Luis I, Anderson L, Attaya V, Park J, Conway J, He MX, Reardon B, Shannon E, Wulf G, Spring LM, Jeselsohn R, Krop I, Lin NU, Partridge A, Winer EP, Mittendorf EA, Liu D, Van Allen EM, Tolaney SM.  2021. Molecular correlates of response to eribulin and pembrolizumab in hormone receptor-positive metastatic breast cancer. Nat Commun. 12(1):5563.

Tewari AK, Cheung ATM, Crowdis J, Conway JR, Camp SY, Wankowicz SA, Livitz DG, Park J, Lis RT, Bosma-Moody A, He MX, AlDubayan SH, Zhang Z, McKay RR, Leshchiner I, Brown M, Balk SP, Getz G, Taplin ME, Van Allen EM. 2021. Molecular features of exceptional response to neoadjuvant anti-androgen therapy in high-risk localized prostate cancer. Cell Rep. 36(10):109665.

He MX, Cuoco MS, Crowdis J, Bosma-Moody A, Zhang Z, Bi K, Kanodia A, Su MJ, Ku SY, Garcia MM, Sweet AR, Rodman C, DelloStritto L, Silver R, Steinharter J, Shah P, Izar B, Walk NC, Burke KP, Bakouny Z, Tewari AK, Liu D, Camp SY, Vokes NI, Salari K, Park J, Vigneau S, Fong L, Russo JW, Yuan X, Balk SP, Beltran H, Rozenblatt-Rosen O, Regev A, Rotem A, Taplin ME, Van Allen EM. 2021. Transcriptional mediators of treatment resistance in lethal prostate cancer. Nat Med. 27(3):426-433.

Bi K, He MX, Bakouny Z, Kanodia A, Napolitano S, Wu J, Grimaldi G, Braun DA, Cuoco MS, Mayorga A, DelloStritto L, Bouchard G, Steinharter J, Tewari AK, Vokes NI, Shannon E, Sun M, Park J, Chang SL, McGregor BA, Haq R, Denize T, Signoretti S, Guerriero JL, Vigneau S, Rozenblatt-Rosen O, Rotem A, Regev A, Choueiri TK, Van Allen EM. 2021. Tumor and immune reprogramming during immunotherapy in advanced renal cell carcinoma. Cancer Cell. 39(5):649-661.e5.

Morrison MS, Wang T, Raguram A, Hemez C, Liu DR. 2021. Disulfide-compatible phage-assisted continuous evolution in the periplasmic space. Nat Commun. 12(1):5959.

Triclin S, Inoue D, Gaillard J, Htet ZM, DeSantis ME, Portran D, Derivery E, Aumeier C, Schaedel L, John K, Leterrier C, Reck-Peterson SL, Blanchoin L, Théry M.  2021. Self-repair protects microtubules from destruction by molecular motors. Nat Mater. 20(6):883-891.

Imran Alsous J, Romeo N, Jackson JA, Mason FM, Dunkel J, Martin AC. 2021. Dynamics of hydraulic and contractile wave-mediated fluid transport during Drosophila oogenesis. PNAS USA. 118(10):e2019749118.

Wang JS, Kamath T, Mazur CM, Mirzamohammadi F, Rotter D, Hojo H, Castro CD, Tokavanich N, Patel R, Govea N, Enishi T, Wu Y, da Silva Martins J, Bruce M, Brooks DJ, Bouxsein ML, Tokarz D, Lin CP, Abdul A, Macosko EZ, Fiscaletti M, Munns CF, Ryder P, Kost-Alimova M, Byrne P, Cimini B, Fujiwara M, Kronenberg HM, Wein MN. 2021. Control of osteocyte dendrite formation by Sp7 and its target gene osteocrin. Nat Commun. 12(1):6271.

Sajman J, Razvag Y, Schidorsky S, Kinrot S, Hermon K, Yakovian O, Sherman E. 2021. Adhering interacting cells to two opposing coverslips allows super-resolution imaging of cell-cell interfaces. Commun Biol. 4(1):439.

Catana C, Laforest R, An H, Boada F, Cao T, Faul D, Jakoby B, Jansen FP, Kemp BJ, Kinahan PE, Larson PEZ, Levine MA, Maniawski P, Mawlawi O, McConathy J, McMillan A, Price JC, Rajagopal A, Sunderland J, Veit-Haibach P, Wangerin KA, Ying C, Hope TA. 2021. A Path to Qualification of PET/MR Scanners for Multicenter Brain Imaging Studies: Evaluation of MR-based Attenuation Correction Methods Using a Patient Phantom. J Nucl Med. 3(4):615-621.

Rodriques SG, Chen LM, Liu S, Zhong ED, Scherrer JR, Boyden ES, Chen F. 2021. RNA timestamps identify the age of single molecules in RNA sequencing. Nat Biotechnol. 39(3):320-325.

Mai MH, Holbrook NM. 2021. A tale to astonish: Ant-Man at the plasmodesmal gates. J Plant Physiol. 261:153431.

Blum TR, Liu H, Packer MS, Xiong X, Lee PG, Zhang S, Richter M, Minasov G, Satchell KJF, Dong M, Liu DR. 2021. Phage-assisted evolution of botulinum neurotoxin proteases with reprogrammed specificity. Science. 371(6531):803-810.

Bauer M, Petkova MD, Gregor T, Wieschaus EF, Bialek W. 2021. Trading bits in the readout from a genetic network. Proc Natl Acad Sci USA. 118(46):e2109011118.

Mizeracka K, Rogers JM, Rumley JD, Shaham S, Bulyk ML, Murray JI, Heiman MG. 2021. Lineage-specific control of convergent differentiation by a Forkhead repressor. Development. 148(19):dev199493.

Zavatone-Veth, J., Canatar, A., Ruben, B., Pehlevan, C. 2021. Asymptotics of representation learning in finite Bayesian neural networks. Advances in neural information processing systems, 34, 24765-24777.

Dani N, Herbst RH, McCabe C, Green GS, Kaiser K, Head JP, Cui J, Shipley FB, Jang A, Dionne D, Nguyen L, Rodman C, Riesenfeld SJ, Prochazka J, Prochazkova M, Sedlacek R, Zhang F, Bryja V, Rozenblatt-Rosen O, Habib N, Regev A, Lehtinen MK.  2021. A cellular and spatial map of the choroid plexus across brain ventricles and ages. Cell. 184(11):3056-3074.e21.

Xu H, Fame RM, Sadegh C, Sutin J, Naranjo C, Della Syau, Cui J, Shipley FB, Vernon A, Gao F, Zhang Y, Holtzman MJ, Heiman M, Warf BC, Lin PY, Lehtinen MK. 2021. Choroid plexus NKCC1 mediates cerebrospinal fluid clearance during mouse early postnatal development. Nat Commun. 12(1):447.

Soleimany AP, Kirkpatrick JD, Su S, Dudani JS, Zhong Q, Bekdemir A, Bhatia SN. 2021. Activatable Zymography Probes Enable In Situ Localization of Protease Dysregulation in Cancer. Cancer Res. 81(1):213-224.

Soleimany AP, Amini A, Goldman S, Rus D, Bhatia SN, Coley CW. 2021. Evidential Deep Learning for Guided Molecular Property Prediction and Discovery. ACS Cent Sci. 7(8):1356-1367.

He J, Nissim L, Soleimany AP, Binder-Nissim A, Fleming HE, Lu TK, Bhatia SN.  2021. Synthetic Circuit-Driven Expression of Heterologous Enzymes for Disease Detection. ACS Synth Biol. 10(9):2231-2242.

Sritharan D, Wang S, Hormoz S. 2021. Computing the Riemannian curvature of image patch and single-cell RNA sequencing data manifolds using extrinsic differential geometry. Proc Natl Acad Sci USA. 118(29):e2100473118.

Robinson KC, Kemény LV, Fell GL, Hermann AL, Allouche J, Ding W, Yekkirala A, Hsiao JJ, Su MY, Theodosakis N, Kozak G, Takeuchi Y, Shen S, Berenyi A, Mao J, Woolf CJ, Fisher DE. 2021. Reduced MC4R signaling alters nociceptive thresholds associated with red hair. Sci Adv. 7(14):eabd1310.

Kemény LV, Robinson KC, Hermann AL, Walker DM, Regan S, Yew YW, Lai YC, Theodosakis N, Rivera PD, Ding W, Yang L, Beyer T, Loh YE, Lo JA, van der Sande AAJ, Sarnie W, Kotler D, Hsiao JJ, Su MY, Kato S, Kotler J, Bilbo SD, Chopra V, Salomon MP, Shen S, Hoon DSB, Asgari MM, Wakeman SE, Nestler EJ, Fisher DE. 2021. Vitamin D deficiency exacerbates UV/endorphin and opioid addiction. Sci Adv. 7(24):eabe4577.

Langellotto F, Dellacherie MO, Yeager C, Ijaz H, Yu J, Cheng CA, Dimitrakakis N, Seiler BT, Gebre MS, Gilboa T, Johnson R, Storm N, Bardales S, Graveline A, White D, Tringides CM, Cartwright MJ, Doherty EJ, Honko A, Griffiths A, Barouch DH, Walt DR, Mooney DJ. 2021. A Modular Biomaterial Scaffold-Based Vaccine Elicits Durable Adaptive Immunity to Subunit SARS-CoV-2 Antigens. Adv Healthc Mater. 10(22):e2101370.

Brennan MÁ, Monahan DS, Brulin B, Gallinetti S, Humbert P, Tringides C, Canal C, Ginebra MP, Layrolle P. 2021. Biomimetic versus sintered macroporous calcium phosphate scaffolds enhanced bone regeneration and human mesenchymal stromal cell engraftment in calvarial defects. Acta Biomater. 135:689-704.

Tringides CM, Vachicouras N, de Lázaro I, Wang H, Trouillet A, Seo BR, Elosegui-Artola A, Fallegger F, Shin Y, Casiraghi C, Kostarelos K, Lacour SP, Mooney DJ.  2021. Viscoelastic surface electrode arrays to interface with viscoelastic tissues. Nat Nanotechnol. 16(9):1019-1029.

Liu D, Lin JR, Robitschek EJ, Kasumova GG, Heyde A, Shi A, Kraya A, Zhang G, Moll T, Frederick DT, Chen YA, Wang S, Schapiro D, Ho LL, Bi K, Sahu A, Mei S, Miao B, Sharova T, Alvarez-Breckenridge C, Stocking JH, Kim T, Fadden R, Lawrence D, Hoang MP, Cahill DP, Malehmir M, Nowak MA, Brastianos PK, Lian CG, Ruppin E, Izar B, Herlyn M, Van Allen EM, Nathanson K, Flaherty KT, Sullivan RJ, Kellis M, Sorger PK, Boland GM. 2021. Evolution of delayed resistance to immunotherapy in a melanoma responder. Nat Med. 27(6):985-992.

Amin AN*, Weinstein EN*, Marks DS. 2021. A generative nonparametric Bayesian model for whole genomes. Advances in Neural Information Processing Systems (NeurIPS). Proceedings of the 35th Conference on Neural Information Processing Systems 2021. (*equal contribution)

Weinstein EN, Marks DS. 2021. A structured observation distribution for generative biological sequence prediction and forecasting. Proceedings of the 38th International Conference on Machine Learning, PMLR 139:11068-11079, 2021.

Bhattacharyya S, Bershtein S, Adkar BV, Woodard J, Shakhnovich EI. 2021. Metabolic response to point mutations reveals principles of modulation of in vivo enzyme activity and phenotype. Mol Syst Biol. 17(6):e10200.

Lukyanenko S, Jang WD, Wei D, Struyven R, Kim Y, Leahy B, Yang H, Rush A, Ben-Yosef D, Needleman D, Pfister H. 2021. Developmental Stage Classification of Embryos Using Two-Stream Neural Network with Linear-Chain Conditional Random Field. Med Image Comput Comput Assist Interv. 12908:363-372.

Rodel HE, Ferreira IATM, Ziegler CGK, Ganga Y, Bernstein M, Hwa SH, Nargan K, Lustig G, Kaplan G, Noursadeghi M, Shalek AK, Steyn AJC, Sigal A. 2021. Aggregated Mycobacterium tuberculosis Enhances the Inflammatory Response. Front Microbiol. 12:757134.

Delorey TM*, Ziegler CGK*, Heimberg G*, Normand R*, Yang Y*, Segerstolpe Å*, Abbondanza D*, Fleming SJ*, Subramanian A*, Montoro DT*, Jagadeesh KA*, Dey KK*, Sen P*, Slyper M*, Pita-Juárez YH*, Phillips D*, Biermann J*, Bloom-Ackermann Z, Barkas N, Ganna A, Gomez J, Melms JC, Katsyv I, Normandin E, Naderi P, Popov YV, Raju SS, Niezen S, Tsai LT, Siddle KJ, Sud M, Tran VM, Vellarikkal SK, Wang Y, Amir-Zilberstein L, Atri DS, Beechem J, Brook OR, Chen J, Divakar P, Dorceus P, Engreitz JM, Essene A, Fitzgerald DM, Fropf R, Gazal S, Gould J, Grzyb J, Harvey T, Hecht J, Hether T, Jané-Valbuena J, Leney-Greene M, Ma H, McCabe C, McLoughlin DE, Miller EM, Muus C, Niemi M, Padera R, Pan L, Pant D, Pe'er C, Pfiffner-Borges J, Pinto CJ, Plaisted J, Reeves J, Ross M, Rudy M, Rueckert EH, Siciliano M, Sturm A, Todres E, Waghray A, Warren S, Zhang S, Zollinger DR, Cosimi L, Gupta RM, Hacohen N, Hibshoosh H, Hide W, Price AL, Rajagopal J, Tata PR, Riedel S, Szabo G, Tickle TL, Ellinor PT, Hung D, Sabeti PC, Novak R, Rogers R, Ingber DE, Jiang ZG, Juric D, Babadi M, Farhi SL, Izar B, Stone JR, Vlachos IS, Solomon IH, Ashenberg O, Porter CBM, Li B, Shalek AK, Villani AC, Rozenblatt-Rosen O, Regev A. 2021. COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets. Nature. 595(7865):107-113. (* contributed equally)

Bein A, Kim S, Goyal G, Cao W, Fadel C, Naziripour A, Sharma S, Swenor B, LoGrande N, Nurani A, Miao VN, Navia AW, Ziegler CGK, Montañes JO, Prabhala P, Kim MS, Prantil-Baun R, Rodas M, Jiang A, O'Sullivan L, Tillya G, Shalek AK, Ingber DE. 2021. Enteric Coronavirus Infection and Treatment Modeled With an Immunocompetent Human Intestine-On-A-Chip. Front Pharmacol. 12:718484.

Ziegler CGK, Miao VN, Owings AH, Navia AW, Tang Y, Bromley JD, Lotfy P, Sloan M, Laird H, Williams HB, George M, Drake RS, Christian T, Parker A, Sindel CB, Burger MW, Pride Y, Hasan M, Abraham GE 3rd, Senitko M, Robinson TO, Shalek AK, Glover SC, Horwitz BH, Ordovas-Montanes J. 2021. Impaired local intrinsic immunity to SARS-CoV-2 infection in severe COVID-19. Cell. 184(18):4713-4733.e22.

Genshaft AS*, Ziegler CGK*, Tzouanas CN*, Mead BE, Jaeger AM, Navia AW, King RP, Mana MD, Huang S, Mitsialis V, Snapper SB, Yilmaz ÖH, Jacks T, Van Humbeck JF, Shalek AK. 2021. Live cell tagging tracking and isolation for spatial transcriptomics using photoactivatable cell dyes. Nat Commun. 12(1):4995. Erratum (Publisher Correction) in: Nat Commun. 2021 Sep 3;12(1):5361. (* contributed equally)

Huang S, Ziegler CGK, Austin J, Mannoun N, Vukovic M, Ordovas-Montanes J, Shalek AK, von Andrian UH. 2021. Lymph nodes are innervated by a unique population of sensory neurons with immunomodulatory potential. Cell. 184(2):441-459.e25.

Muus C, Luecken MD, Eraslan G, Sikkema L, Waghray A, Heimberg G, Kobayashi Y, Vaishnav ED, Subramanian A, Smillie C, Jagadeesh KA, Duong ET, Fiskin E, Torlai Triglia E, Ansari M, Cai P, Lin B, Buchanan J, Chen S, Shu J, Haber AL, Chung H, Montoro DT, Adams T, Aliee H, Allon SJ, Andrusivova Z, Angelidis I, Ashenberg O, Bassler K, Bécavin C, Benhar I, Bergenstråhle J, Bergenstråhle L, Bolt L, Braun E, Bui LT, Callori S, Chaffin M, Chichelnitskiy E, Chiou J, Conlon TM, Cuoco MS, Cuomo ASE, Deprez M, Duclos G, Fine D, Fischer DS, Ghazanfar S, Gillich A, Giotti B, Gould J, Guo M, Gutierrez AJ, Habermann AC, Harvey T, He P, Hou X, Hu L, Hu Y, Jaiswal A, Ji L, Jiang P, Kapellos TS, Kuo CS, Larsson L, Leney-Greene MA, Lim K, Litviňuková M, Ludwig LS, Lukassen S, Luo W, Maatz H, Madissoon E, Mamanova L, Manakongtreecheep K, Leroy S, Mayr CH, Mbano IM, McAdams AM, Nabhan AN, Nyquist SK, Penland L, Poirion OB, Poli S, Qi C, Queen R, Reichart D, Rosas I, Schupp JC, Shea CV, Shi X, Sinha R, Sit RV, Slowikowski K, Slyper M, Smith NP, Sountoulidis A, Strunz M, Sullivan TB, Sun D, Talavera-López C, Tan P, Tantivit J, Travaglini KJ, Tucker NR, Vernon KA, Wadsworth MH, Waldman J, Wang X, Xu K, Yan W, Zhao W, Ziegler CGK; NHLBI LungMap Consortium; Human Cell Atlas Lung Biological Network. 2021. Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics. Nat Med. 27(3):546-559.

Vogt K, Zimmerman DM, Schlichting M, Hernandez-Nunez L, Qin S, Malacon K, Rosbash M, Pehlevan C, Cardona A, Samuel ADT.  2021. Internal state configures olfactory behavior and early sensory processing in Drosophila larvae. Sci Adv. 7(1):eabd6900.