2011 Biophysics Student Publications

2011 Publications:

Shea J, Agarwala V, Philippakis AA, Maguire J, Banks E, Depristo M, Thomson B, Guiducci C, Onofrio RC, Kathiresan S, Gabriel S, Burtt NP, Daly MJ, Groop L, Altshuler D; Myocardial Infarction Genetics Consortium. 2011. Comparing Strategies to Fine-map the Association of Common SNPs at Chromosome 9p21 with Type 2 Diabetes and Myocardial Infarction. Nat Genet. 43(8):801-5.

Catana C, Benner T, van der Kouwe A, Byars L, Hamm M, Chonde DB, Michel CJ, El Fakhri G, Schmand M, Sorensen AG. 2011. MR-assisted PET Motion Correction for Neurologic Studies in an Integrated MR-PET Scanner. J. Nucl Med. 52(1): 154-61.

Cohen AE, Fields AP. 2011. The Cat That Caught the Canary: What To Do with Single-Molecule Trapping. ACS Nano, 5, 5296-5299.

Fields AP, Cohen AE. 2011. Electrokinetic trapping at the one nanometer limit, PNAS, 108, 8937-8942.

Fudenberg G, Getz G, Meyerson M, Mirny LA. 2011. High-order Chromatin Architecture Shapes the Landscape of Chromosomal Alterations in Cancer. Nature Biotechnology 29(12): 1109-13.  

Vázquez-Reina A, Gelbart M, Huang D, Lichtman J, Miller E, and Pfister H. 2011. Segmentation fusion for connectomics. 2011 International Conference on Computer Vision, Barcelona, Spain, pp. 177-184.

Mammoto T, Mammoto A, Torisawa YS, Tat T, Gibbs A, Derda R, Mannix R, de Bruijn M, Yung CW, Huh D, Ingber DE. 2011. Mechanochemical Control of Mesenchymal Condensation and Embryonic Tooth Organ Formation. Dev Cell. 21(4): 758-769. 

Jordan DM, Kiezun A, Baxter SM, Agarwala V, Green RC, Murray MF, Pugh T, Lebo MS, Rehm HL, Funke BH, Sunyaev SR. 2011. Development and Validation of a Computational Method for Assessment of Missense Variants in Hypertrophic Cardiomyopathy. American Journal of Human Genetics, Volume 88, Issue 2, 183-192.

Field CM, Wühr M, Anderson GA, Kueh HY, Strickland D, Mitchison TJ. 2011. Actin behavior in bulk cytoplasm is cell cycle regulated in early vertebrate embryos. J Cell Sci. 124(Pt 12):2086-95.  

Mori M, Monnier N, Daigle N, Bathe M, Ellenberg J, Lénárt P. 2011. Intracellular Transport by an Anchored Homogeneously Contracting F-actin Meshwork. Curr. Biol. 21(7):606-11.

Nichols AJ, Evans CL. 2011. Video-rate Scanning Confocal Microscopy and Microendoscopy. J. Vis. Exp. (56), e3252.

Yoon TJ, Lee H, Shao H, Weissleder R. 2011. Highly magnetic core-shell nanoparticles with a unique magnetization mechanism. Angew Chem Int Ed Engl. 50(20):4663-6.

Yoon TJ, Lee H, Shao H, Hilderbrand SA, Weissleder R. 2011. Multicore assemblies potentiate magnetic properties of biomagnetic nanoparticles. Adv Mater. 23(41):4793-7.

Tang H, Kreiman G. 2011. Face recognition: vision and emotions beyond the bubble. Curr Biol. 21(21):R888-90.

Mukherji S, Ebert MS, Zheng GX, Tsang JS, Sharp PA, van Oudenaarden A. 2011. MicroRNAs can generate thresholds in target gene expression. Nat Genet. 43(9):854-9.

Keliher EJ, Reiner T, Turetsky A, Hilderbrand SA, Weissleder R. 2011. High-Yielding, Two-Step (18)F Labeling Strategy for (18)F-PARP1 Inhibitors. ChemMedChem. 6(3):424-7.

Wang HH, Xu G, Vonner A, Church GM. 2011. Modified Bases Enable High-efficiency Oligonucleotide-Mediated Allelic Replacement via Mismatch Repair Evasion. Nucleic Acids Res. 39(16):7336-47.